1 HAMP#1
33-100 aa · 68 aa · 20.2% of protein
Raw token
HAMP:33:0.000000000817:100:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FLH42_RS08715
Histidine kinase, Classic
Clostridioides difficile · GCF_007114725
ClassHKTypeClassicLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007114725#FLH42_RS08715Stable P2CS identifier used across views.
GenomeGCF_007114725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 336 aa (69.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation3 items
2 HisKA#2
121-184 aa · 64 aa · 19.0% of protein
Raw token
HisKA:121:0.00000000632:184:64:643 HATPase_c#3
234-336 aa · 103 aa · 30.7% of protein
Raw token
HATPase_c:234:4.71e-16:336:107:109- Raw architecture: HAMP:33:0.000000000817:100:70:69#HisKA:121:0.00000000632:184:64:64#HATPase_c:234:4.71e-16:336:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007114725::NZ_VIMV01000005.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span175409-177195Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_007114725::NZ_VIMV01000005.1::G00049Context members
FLH42_RS08715FLH42_RS08720
Partner locus tags
FLH42_RS08715FLH42_RS08720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236875362.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFLH42_RS08715Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_VIMV01000005.1Sequence record reported by the local genomic context database.
Genomic interval175 409-176 419 nt1 011 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span175 409-177 195 ntGCF_007114725::NZ_VIMV01000005.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007114725::NZ_VIMV01000005.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VIMV01000005.1All displayed genes belong to this local TCS context.
Neighborhood span175 409-177 195 nt1 787 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
175 409 nt177 195 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FLH42_RS08715GCF_007114725#FLH42_RS08715
HKClassicCurrent focus
175 409-176 419 nt · Reverse (-)
FLH42_RS08720GCF_007114725#FLH42_RS08720
RROmpR
176 527-177 195 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007114725#FLH42_RS08715The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2846920
Simplified PFAM architecture for HKOC_2846920
PFAM domain coverage: 166 / 336 aa (49.4%)
1 aa336 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[121-184] | HATPase_c[234-335]
- Domain count: 2
- Matched identifier: HKOC_2846920
- Positioned domains: HisKA 121-184 ; HATPase_c 234-335
Cluster members and taxonomy
Representative gene: GCF_007114725#FLH42_RS08715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007114725
AssemblyASM711472v1 · Contighaploid
Genome composition4 219 771 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 52 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key