1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:6.84e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EWM26_RS13230
Response regulator OmpR family
Clostridioides difficile · GCF_007002485
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_007002485#EWM26_RS13230Stable P2CS identifier used across views.
GenomeGCF_007002485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:4.62e-28:232:78:77- Raw architecture: Response_reg:5:6.84e-36:114:111:111#Trans_reg_C:155:4.62e-28:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_007002485::NZ_SEPD01000045.1::G00036
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span12803-18528Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEWM26_13230RefSeq proteinWP_021363030.1
Context group ID
GCF_007002485::NZ_SEPD01000045.1::G00036Context members
EWM26_RS13225EWM26_RS13230EWM26_RS13235EWM26_RS13240EWM26_RS13245
Partner locus tags
EWM26_RS13225EWM26_RS13230EWM26_RS13235EWM26_RS13240EWM26_RS13245
Partner old locus tags
EWM26_13225EWM26_13230EWM26_13235EWM26_13240EWM26_13245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021363030.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEWM26_RS13230Primary locus identifier stored in the genes table.
Old locus tagEWM26_13230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SEPD01000045.1Sequence record reported by the local genomic context database.
Genomic interval13 954-14 652 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 803-18 528 ntGCF_007002485::NZ_SEPD01000045.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007002485::NZ_SEPD01000045.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SEPD01000045.1All displayed genes belong to this local TCS context.
Neighborhood span12 803-18 528 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 803 nt18 528 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
EWM26_RS13225GCF_007002485#EWM26_RS13225
HKClassic
12 803-13 918 nt · Reverse (-)
EWM26_RS13230GCF_007002485#EWM26_RS13230
RROmpRCurrent focus
13 954-14 652 nt · Reverse (-)
EWM26_RS13235GCF_007002485#EWM26_RS13235
RROmpR
15 034-15 714 nt · Reverse (-)
EWM26_RS13240GCF_007002485#EWM26_RS13240
HKClassic
15 764-17 779 nt · Reverse (-)
EWM26_RS13245GCF_007002485#EWM26_RS13245
RROmpR
17 851-18 528 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448725#QAW_RS17155Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1121682
Simplified PFAM architecture for RROC_1121682
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1121682
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000448725#QAW_RS17155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007002485
AssemblyASM700248v1 · Contighaploid
Genome composition4 022 176 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key