1 HisKA#1
83-146 aa · 64 aa · 21.5% of protein
Raw token
HisKA:83:0.000000000018:146:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EWL97_RS02090
Histidine kinase, Classic
Clostridioides difficile · GCF_007001945
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007001945#EWL97_RS02090Stable P2CS identifier used across views.
GenomeGCF_007001945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 298 aa (52.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
192-283 aa · 92 aa · 30.9% of protein
Raw token
HATPase_c:192:5.1e-18:283:93:109- Raw architecture: HisKA:83:0.000000000018:146:64:64#HATPase_c:192:5.1e-18:283:93:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007001945::NZ_SEQC01000001.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span516988-517884Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEWL97_02090RefSeq proteinWP_021421910.1
Context group ID
GCF_007001945::NZ_SEQC01000001.1::G00023Context members
EWL97_RS02090
Partner locus tags
EWL97_RS02090
Partner old locus tags
EWL97_02090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021421910.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEWL97_RS02090Primary locus identifier stored in the genes table.
Old locus tagEWL97_02090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SEQC01000001.1Sequence record reported by the local genomic context database.
Genomic interval516 988-517 884 nt897 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span516 988-517 884 ntGCF_007001945::NZ_SEQC01000001.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001945::NZ_SEQC01000001.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SEQC01000001.1All displayed genes belong to this local TCS context.
Neighborhood span516 988-517 884 nt897 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
516 988 nt517 884 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EWL97_RS02090GCF_007001945#EWL97_RS02090
HKClassicCurrent focus
516 988-517 884 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451745#QSK_RS18930Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888713
Simplified PFAM architecture for HKOC_2888713
PFAM domain coverage: 151 / 298 aa (50.7%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-145] | HATPase_c[193-282]
- Domain count: 2
- Matched identifier: HKOC_2888713
- Positioned domains: HisKA 85-145 ; HATPase_c 193-282
Cluster members and taxonomy
Representative gene: GCF_000451745#QSK_RS18930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001945
AssemblyASM700194v1 · Contighaploid
Genome composition4 189 588 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key