1 HisKA#1
110-175 aa · 66 aa · 19.9% of protein
Raw token
HisKA:110:0.00000000582:175:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EWM01_RS07710
Histidine kinase, Classic
Clostridioides difficile · GCF_007001925
ClassHKTypeClassicLength332 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007001925#EWM01_RS07710Stable P2CS identifier used across views.
GenomeGCF_007001925Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length332 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 332 aa (51.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa332 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
226-329 aa · 104 aa · 31.3% of protein
Raw token
HATPase_c:226:1.91e-30:329:104:109- Raw architecture: HisKA:110:0.00000000582:175:66:64#HATPase_c:226:1.91e-30:329:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007001925::NZ_SEQG01000017.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72498-74226Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEWM01_07715RefSeq proteinWP_142793671.1
Context group ID
GCF_007001925::NZ_SEQG01000017.1::G00016Context members
EWM01_RS07705EWM01_RS07710
Partner locus tags
EWM01_RS07705EWM01_RS07710
Partner old locus tags
EWM01_07710EWM01_07715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142793671.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEWM01_RS07710Primary locus identifier stored in the genes table.
Old locus tagEWM01_07715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SEQG01000017.1Sequence record reported by the local genomic context database.
Genomic interval73 228-74 226 nt999 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 498-74 226 ntGCF_007001925::NZ_SEQG01000017.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001925::NZ_SEQG01000017.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SEQG01000017.1All displayed genes belong to this local TCS context.
Neighborhood span72 498-74 226 nt1 729 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 498 nt74 226 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EWM01_RS07705GCF_007001925#EWM01_RS07705
RROmpR
72 498-73 178 nt · Reverse (-)
EWM01_RS07710GCF_007001925#EWM01_RS07710
HKClassicCurrent focus
73 228-74 226 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0218795Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842456
Simplified PFAM architecture for HKOC_0842456
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842456
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0218795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001925
AssemblyASM700192v1 · Contighaploid
Genome composition4 262 048 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key