1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:5.44e-29:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EWM13_RS02880
Response regulator OmpR family
Clostridioides difficile · GCF_007001665
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007001665#EWM13_RS02880Stable P2CS identifier used across views.
GenomeGCF_007001665Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 223 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-219 aa · 77 aa · 34.5% of protein
Raw token
Trans_reg_C:143:2.97e-28:219:77:77- Raw architecture: Response_reg:4:5.44e-29:112:110:111#Trans_reg_C:143:2.97e-28:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007001665::NZ_SEQS01000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30549-32130Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEWM13_02880RefSeq proteinWP_003435308.1
Context group ID
GCF_007001665::NZ_SEQS01000003.1::G00035Context members
EWM13_RS02880EWM13_RS02885
Partner locus tags
EWM13_RS02880EWM13_RS02885
Partner old locus tags
EWM13_02880EWM13_02885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003435308.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3H4G0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3H4G0_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEWM13_RS02880Primary locus identifier stored in the genes table.
Old locus tagEWM13_02880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SEQS01000003.1Sequence record reported by the local genomic context database.
Genomic interval30 549-31 220 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 549-32 130 ntGCF_007001665::NZ_SEQS01000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001665::NZ_SEQS01000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SEQS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span30 549-32 130 nt1 582 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 549 nt32 130 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EWM13_RS02880GCF_007001665#EWM13_RS02880
RROmpRCurrent focus
30 549-31 220 nt · Forward (+)
EWM13_RS02885GCF_007001665#EWM13_RS02885
HKClassic
31 222-32 130 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS14110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588061
Simplified PFAM architecture for RROC_1588061
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[143-218]
- Domain count: 2
- Matched identifier: RROC_1588061
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 143-218 ; Trans_reg_C 143-218
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS14110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001665
AssemblyASM700166v1 · Contighaploid
Genome composition4 055 225 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key