1 Response_reg#1
4-117 aa · 114 aa · 48.5% of protein
Raw token
Response_reg:4:1.06e-22:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EWM39_RS06200
Response regulator LytTR family
Clostridioides difficile · GCF_007001595
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007001595#EWM39_RS06200Stable P2CS identifier used across views.
GenomeGCF_007001595Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 235 aa (87.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-227 aa · 92 aa · 39.1% of protein
Raw token
LytTR:136:4.52e-21:227:97:98- Raw architecture: Response_reg:4:1.06e-22:117:117:111#LytTR:136:4.52e-21:227:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007001595::NZ_SEQW01000005.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span198625-199332Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEWM39_06200RefSeq proteinWP_022618977.1
Context group ID
GCF_007001595::NZ_SEQW01000005.1::G00047Context members
EWM39_RS06200
Partner locus tags
EWM39_RS06200
Partner old locus tags
EWM39_06200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022618977.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEWM39_RS06200Primary locus identifier stored in the genes table.
Old locus tagEWM39_06200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SEQW01000005.1Sequence record reported by the local genomic context database.
Genomic interval198 625-199 332 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span198 625-199 332 ntGCF_007001595::NZ_SEQW01000005.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001595::NZ_SEQW01000005.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SEQW01000005.1All displayed genes belong to this local TCS context.
Neighborhood span198 625-199 332 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
198 625 nt199 332 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EWM39_RS06200GCF_007001595#EWM39_RS06200
RRLytTRCurrent focus
198 625-199 332 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531505#BN172_RS19025Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1018625
Simplified PFAM architecture for RROC_1018625
PFAM domain coverage: 202 / 235 aa (86.0%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_1018625
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 138-226 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_000531505#BN172_RS19025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001595
AssemblyASM700159v1 · Contighaploid
Genome composition4 360 576 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key