1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:2.17e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N49_RS08250
Response regulator OmpR family
Clostridioides difficile · GCF_007001325
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007001325#D1N49_RS08250Stable P2CS identifier used across views.
GenomeGCF_007001325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-221 aa · 78 aa · 34.2% of protein
Raw token
Trans_reg_C:144:1.09e-29:221:78:77- Raw architecture: Response_reg:4:2.17e-34:113:111:111#Trans_reg_C:144:1.09e-29:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007001325::NZ_QWVL01000019.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21752-23414Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N49_08255RefSeq proteinWP_003434895.1
Context group ID
GCF_007001325::NZ_QWVL01000019.1::G00012Context members
D1N49_RS08250D1N49_RS08255
Partner locus tags
D1N49_RS08250D1N49_RS08255
Partner old locus tags
D1N49_08255D1N49_08260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003434895.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N8D6Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N8D6_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N49_RS08250Primary locus identifier stored in the genes table.
Old locus tagD1N49_08255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWVL01000019.1Sequence record reported by the local genomic context database.
Genomic interval21 752-22 438 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 752-23 414 ntGCF_007001325::NZ_QWVL01000019.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001325::NZ_QWVL01000019.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWVL01000019.1All displayed genes belong to this local TCS context.
Neighborhood span21 752-23 414 nt1 663 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 752 nt23 414 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N49_RS08250GCF_007001325#D1N49_RS08250
RROmpRCurrent focus
21 752-22 438 nt · Forward (+)
D1N49_RS08255GCF_007001325#D1N49_RS08255
HKClassic
22 425-23 414 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0218300Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301498
Simplified PFAM architecture for RROC_1301498
PFAM domain coverage: 188 / 228 aa (82.5%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-221]
- Domain count: 2
- Matched identifier: RROC_1301498
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-221 ; Trans_reg_C 144-221
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0218300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001325
AssemblyASM700132v1 · Contighaploid
Genome composition4 246 021 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key