1 HisKA#1
195-255 aa · 61 aa · 14.8% of protein
Raw token
HisKA:195:0.000000000000205:255:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N52_RS16215
Histidine kinase, Classic
Clostridioides difficile · GCF_007001275
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007001275#D1N52_RS16215Stable P2CS identifier used across views.
GenomeGCF_007001275Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 413 aa (40.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa413 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
302-407 aa · 106 aa · 25.7% of protein
Raw token
HATPase_c:302:1.6e-25:407:106:109- Raw architecture: HisKA:195:0.000000000000205:255:61:64#HATPase_c:302:1.6e-25:407:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007001275::NZ_QWVI01000156.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6682-8620Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N52_16220RefSeq proteinWP_009901676.1
Context group ID
GCF_007001275::NZ_QWVI01000156.1::G00019Context members
D1N52_RS16215D1N52_RS16220
Partner locus tags
D1N52_RS16215D1N52_RS16220
Partner old locus tags
D1N52_16220D1N52_16225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009901676.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74QD82Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74QD82_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N52_RS16215Primary locus identifier stored in the genes table.
Old locus tagD1N52_16220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWVI01000156.1Sequence record reported by the local genomic context database.
Genomic interval6 682-7 923 nt1 242 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 682-8 620 ntGCF_007001275::NZ_QWVI01000156.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001275::NZ_QWVI01000156.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWVI01000156.1All displayed genes belong to this local TCS context.
Neighborhood span6 682-8 620 nt1 939 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 682 nt8 620 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N52_RS16215GCF_007001275#D1N52_RS16215
HKClassicCurrent focus
6 682-7 923 nt · Reverse (-)
D1N52_RS16220GCF_007001275#D1N52_RS16220
RROmpR
7 934-8 620 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155025#UAB_RS0201930Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2328116
Simplified PFAM architecture for HKOC_2328116
PFAM domain coverage: 172 / 413 aa (41.6%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[193-255] | HATPase_c[302-410]
- Domain count: 2
- Matched identifier: HKOC_2328116
- Positioned domains: HisKA 193-255 ; HATPase_c 302-410
Cluster members and taxonomy
Representative gene: GCF_000155025#UAB_RS0201930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001275
AssemblyASM700127v1 · Contighaploid
Genome composition4 245 029 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 53 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key