1 Response_reg#1
6-83 aa · 78 aa · 94.0% of protein
Raw token
Response_reg:6:5.86e-21:83:79:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N53_RS18800
Response regulator, CheY family
Clostridioides difficile · GCF_007001255
ClassRRTypeCheYLength83 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007001255#D1N53_RS18800Stable P2CS identifier used across views.
GenomeGCF_007001255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length83 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage78 / 83 aa (94.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa83 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:5.86e-21:83:79:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007001255::NZ_QWVH01000178.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-250Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N53_18810RefSeq proteinWP_142801901.1
Context group ID
GCF_007001255::NZ_QWVH01000178.1::G00022Context members
D1N53_RS18800
Partner locus tags
D1N53_RS18800
Partner old locus tags
D1N53_18810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142801901.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N53_RS18800Primary locus identifier stored in the genes table.
Old locus tagD1N53_18810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWVH01000178.1Sequence record reported by the local genomic context database.
Genomic interval1-250 nt250 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-250 ntGCF_007001255::NZ_QWVH01000178.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001255::NZ_QWVH01000178.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWVH01000178.1All displayed genes belong to this local TCS context.
Neighborhood span1-250 nt250 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt250 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N53_RS18800GCF_007001255#D1N53_RS18800
RRCheYCurrent focus
1-250 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS13790Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932228
Simplified PFAM architecture for RROC_0932228
PFAM domain coverage: 183 / 238 aa (76.9%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[161-234]
- Domain count: 2
- Matched identifier: RROC_0932228
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 161-234 ; Trans_reg_C 161-234
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS13790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001255
AssemblyASM700125v1 · Contighaploid
Genome composition4 498 869 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 50 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key