1 HisKA#1
2-53 aa · 52 aa · 23.4% of protein
Raw token
HisKA:2:0.00000007:53:52:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N53_RS05190
Histidine kinase, Classic
Clostridioides difficile · GCF_007001255
ClassHKTypeClassicLength222 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007001255#D1N53_RS05190Stable P2CS identifier used across views.
GenomeGCF_007001255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 222 aa (70.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
114-218 aa · 105 aa · 47.3% of protein
Raw token
HATPase_c:114:8.51e-22:218:106:109- Raw architecture: HisKA:2:0.00000007:53:52:64#HATPase_c:114:8.51e-22:218:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007001255::NZ_QWVH01000015.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span57040-57709Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N53_05190RefSeq proteinWP_142801758.1
Context group ID
GCF_007001255::NZ_QWVH01000015.1::G00015Context members
D1N53_RS05190
Partner locus tags
D1N53_RS05190
Partner old locus tags
D1N53_05190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142801758.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N53_RS05190Primary locus identifier stored in the genes table.
Old locus tagD1N53_05190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWVH01000015.1Sequence record reported by the local genomic context database.
Genomic interval57 040-57 709 nt670 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 040-57 709 ntGCF_007001255::NZ_QWVH01000015.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001255::NZ_QWVH01000015.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWVH01000015.1All displayed genes belong to this local TCS context.
Neighborhood span57 040-57 709 nt670 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 040 nt57 709 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N53_RS05190GCF_007001255#D1N53_RS05190
HKClassicCurrent focus
57 040-57 709 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS15875Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2557917
Simplified PFAM architecture for HKOC_2557917
PFAM domain coverage: 219 / 386 aa (56.7%)
1 aa386 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[106-151] | HisKA[164-231] | HATPase_c[278-382]
- Domain count: 3
- Matched identifier: HKOC_2557917
- Positioned domains: HAMP 106-151 ; HisKA 164-231 ; HATPase_c 278-382
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS15875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001255
AssemblyASM700125v1 · Contighaploid
Genome composition4 498 869 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 50 · RR 56CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key