1 Response_reg#1
4-112 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:4:2.87e-16:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N54_RS00240
Response regulator LytTR family
Clostridioides difficile · GCF_007001225
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007001225#D1N54_RS00240Stable P2CS identifier used across views.
GenomeGCF_007001225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 236 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-227 aa · 89 aa · 37.7% of protein
Raw token
LytTR:139:7.08e-21:227:95:98- Raw architecture: Response_reg:4:2.87e-16:112:112:111#LytTR:139:7.08e-21:227:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007001225::NZ_QWVG01000001.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span59653-60363Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N54_00240RefSeq proteinWP_021422038.1
Context group ID
GCF_007001225::NZ_QWVG01000001.1::G00017Context members
D1N54_RS00240
Partner locus tags
D1N54_RS00240
Partner old locus tags
D1N54_00240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021422038.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N54_RS00240Primary locus identifier stored in the genes table.
Old locus tagD1N54_00240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWVG01000001.1Sequence record reported by the local genomic context database.
Genomic interval59 653-60 363 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 653-60 363 ntGCF_007001225::NZ_QWVG01000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001225::NZ_QWVG01000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWVG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span59 653-60 363 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 653 nt60 363 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N54_RS00240GCF_007001225#D1N54_RS00240
RRLytTRCurrent focus
59 653-60 363 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS15820Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0989908
Simplified PFAM architecture for RROC_0989908
PFAM domain coverage: 201 / 236 aa (85.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[140-227]
- Domain count: 2
- Matched identifier: RROC_0989908
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 140-227 ; LytTR 140-227
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS15820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001225
AssemblyASM700122v1 · Contighaploid
Genome composition4 283 259 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 53 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key