1 Response_reg#1
7-117 aa · 111 aa · 63.4% of protein
Raw token
Response_reg:7:4.91e-34:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N57_RS10030
Response regulator, CheY family
Clostridioides difficile · GCF_007001195
ClassRRTypeCheYLength175 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007001195#D1N57_RS10030Stable P2CS identifier used across views.
GenomeGCF_007001195Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length175 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 175 aa (63.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa175 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:4.91e-34:117:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007001195::NZ_QWVD01000008.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span145492-147615Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N57_10030RefSeq proteinWP_142797440.1
Context group ID
GCF_007001195::NZ_QWVD01000008.1::G00056Context members
D1N57_RS10025D1N57_RS10030
Partner locus tags
D1N57_RS10025D1N57_RS10030
Partner old locus tags
D1N57_10025D1N57_10030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142797440.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N57_RS10030Primary locus identifier stored in the genes table.
Old locus tagD1N57_10030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWVD01000008.1Sequence record reported by the local genomic context database.
Genomic interval147 090-147 615 nt526 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span145 492-147 615 ntGCF_007001195::NZ_QWVD01000008.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001195::NZ_QWVD01000008.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWVD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span145 492-147 615 nt2 124 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 492 nt147 615 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N57_RS10025GCF_007001195#D1N57_RS10025
HKClassic
145 492-147 099 nt · Forward (+)
D1N57_RS10030GCF_007001195#D1N57_RS10030
RRCheYCurrent focus
147 090-147 615 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047051
Simplified PFAM architecture for RROC_1047051
PFAM domain coverage: 188 / 234 aa (80.3%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-117] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1047051
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001195
AssemblyASM700119v1 · Contighaploid
Genome composition4 189 649 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 45 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key