1 HisKA#1
228-296 aa · 69 aa · 15.2% of protein
Raw token
HisKA:228:0.000000000000437:296:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N55_RS05825
Histidine kinase, Classic
Clostridioides difficile · GCF_007001185
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007001185#D1N55_RS05825Stable P2CS identifier used across views.
GenomeGCF_007001185Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 453 aa (39.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-452 aa · 110 aa · 24.3% of protein
Raw token
HATPase_c:343:1.31e-26:452:110:109- Raw architecture: HisKA:228:0.000000000000437:296:69:64#HATPase_c:343:1.31e-26:452:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007001185::NZ_QWVF01000006.1::G00047
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span97476-98837Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N55_05830RefSeq proteinWP_254171743.1
Context group ID
GCF_007001185::NZ_QWVF01000006.1::G00047Context members
D1N55_RS05825
Partner locus tags
D1N55_RS05825
Partner old locus tags
D1N55_05830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254171743.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N55_RS05825Primary locus identifier stored in the genes table.
Old locus tagD1N55_05830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWVF01000006.1Sequence record reported by the local genomic context database.
Genomic interval97 476-98 837 nt1 362 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span97 476-98 837 ntGCF_007001185::NZ_QWVF01000006.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001185::NZ_QWVF01000006.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWVF01000006.1All displayed genes belong to this local TCS context.
Neighborhood span97 476-98 837 nt1 362 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
97 476 nt98 837 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N55_RS05825GCF_007001185#D1N55_RS05825
HKClassicCurrent focus
97 476-98 837 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007001185#D1N55_RS05825The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1928746
Simplified PFAM architecture for HKOC_1928746
PFAM domain coverage: 172 / 453 aa (38.0%)
1 aa453 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[228-289] | HATPase_c[343-452]
- Domain count: 2
- Matched identifier: HKOC_1928746
- Positioned domains: HisKA 228-289 ; HATPase_c 343-452
Cluster members and taxonomy
Representative gene: GCF_007001185#D1N55_RS05825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001185
AssemblyASM700118v1 · Contighaploid
Genome composition4 068 039 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key