1 Response_reg#1
35-119 aa · 85 aa · 35.4% of protein
Raw token
Response_reg:35:1.14e-16:119:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N56_RS19645
Response regulator LytTR family
Clostridioides difficile · GCF_007001175
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007001175#D1N56_RS19645Stable P2CS identifier used across views.
GenomeGCF_007001175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 240 aa (74.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-232 aa · 93 aa · 38.8% of protein
Raw token
LytTR:140:3.11e-22:232:97:98- Raw architecture: Response_reg:35:1.14e-16:119:88:111#LytTR:140:3.11e-22:232:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007001175::NZ_QWVE01000183.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-723Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N56_19665RefSeq proteinWP_232860354.1
Context group ID
GCF_007001175::NZ_QWVE01000183.1::G00013Context members
D1N56_RS19645
Partner locus tags
D1N56_RS19645
Partner old locus tags
D1N56_19665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232860354.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N56_RS19645Primary locus identifier stored in the genes table.
Old locus tagD1N56_19665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWVE01000183.1Sequence record reported by the local genomic context database.
Genomic interval1-723 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-723 ntGCF_007001175::NZ_QWVE01000183.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001175::NZ_QWVE01000183.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWVE01000183.1All displayed genes belong to this local TCS context.
Neighborhood span1-723 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt723 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N56_RS19645GCF_007001175#D1N56_RS19645
RRLytTRCurrent focus
1-723 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030250675#QQO68_RS05835Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0781506
Simplified PFAM architecture for RROC_0781506
PFAM domain coverage: 188 / 246 aa (76.4%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[30-125] | LytTR[146-237]
- Domain count: 2
- Matched identifier: RROC_0781506
- Positioned domains: Response_reg 30-125 ; LytTR 146-237
Cluster members and taxonomy
Representative gene: GCF_030250675#QQO68_RS05835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001175
AssemblyASM700117v1 · Contighaploid
Genome composition4 153 459 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key