1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:2.01e-28:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N56_RS01885
Response regulator OmpR family
Clostridioides difficile · GCF_007001175
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007001175#D1N56_RS01885Stable P2CS identifier used across views.
GenomeGCF_007001175Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:149:4.96e-19:223:76:77- Raw architecture: Response_reg:3:2.01e-28:115:113:111#Trans_reg_C:149:4.96e-19:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007001175::NZ_QWVE01000004.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74764-76736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N56_01885RefSeq proteinWP_021364217.1
Context group ID
GCF_007001175::NZ_QWVE01000004.1::G00029Context members
D1N56_RS01885D1N56_RS01890
Partner locus tags
D1N56_RS01885D1N56_RS01890
Partner old locus tags
D1N56_01885D1N56_01890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021364217.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N56_RS01885Primary locus identifier stored in the genes table.
Old locus tagD1N56_01885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWVE01000004.1Sequence record reported by the local genomic context database.
Genomic interval74 764-75 450 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span74 764-76 736 ntGCF_007001175::NZ_QWVE01000004.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001175::NZ_QWVE01000004.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWVE01000004.1All displayed genes belong to this local TCS context.
Neighborhood span74 764-76 736 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 764 nt76 736 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N56_RS01885GCF_007001175#D1N56_RS01885
RROmpRCurrent focus
74 764-75 450 nt · Forward (+)
D1N56_RS01890GCF_007001175#D1N56_RS01890
HKClassic
75 444-76 736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448745#QC1_RS03040Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304782
Simplified PFAM architecture for RROC_1304782
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[151-223]
- Domain count: 2
- Matched identifier: RROC_1304782
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 151-223 ; Trans_reg_C 151-223
Cluster members and taxonomy
Representative gene: GCF_000448745#QC1_RS03040
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 121 total members. Page 1 / 3.
GCF_000448745#QC1_RS03040 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001175
AssemblyASM700117v1 · Contighaploid
Genome composition4 153 459 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key