1 Response_reg#1
3-114 aa · 112 aa · 29.1% of protein
Raw token
Response_reg:3:1.19e-25:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N58_RS14335
Response regulator, unclassified
Clostridioides difficile · GCF_007001155
ClassRRTypeunclassifiedLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007001155#D1N58_RS14335Stable P2CS identifier used across views.
GenomeGCF_007001155Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage231 / 385 aa (60.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation2 items
2 AAA_5#2
157-275 aa · 119 aa · 30.9% of protein
Raw token
AAA_5:157:0.0000000026:275:128:135- Raw architecture: Response_reg:3:1.19e-25:114:112:111#AAA_5:157:0.0000000026:275:128:135
- Domain description: 1 Response_reg,1 AAA_5
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007001155::NZ_QWVC01000319.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1350-4499Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N58_14335RefSeq proteinWP_142798124.1
Context group ID
GCF_007001155::NZ_QWVC01000319.1::G00019Context members
D1N58_RS14330D1N58_RS14335
Partner locus tags
D1N58_RS14330D1N58_RS14335
Partner old locus tags
D1N58_14330D1N58_14335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142798124.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N58_RS14335Primary locus identifier stored in the genes table.
Old locus tagD1N58_14335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWVC01000319.1Sequence record reported by the local genomic context database.
Genomic interval3 344-4 499 nt1 156 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 350-4 499 ntGCF_007001155::NZ_QWVC01000319.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007001155::NZ_QWVC01000319.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWVC01000319.1All displayed genes belong to this local TCS context.
Neighborhood span1 350-4 499 nt3 150 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 350 nt4 499 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N58_RS14330GCF_007001155#D1N58_RS14330
HKClassic
1 350-3 344 nt · Forward (+)
D1N58_RS14335GCF_007001155#D1N58_RS14335
RRunclassifiedCurrent focus
3 344-4 499 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449005#QCE_RS08590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0334040
Simplified PFAM architecture for RROC_0334040
PFAM domain coverage: 387 / 440 aa (88.0%)
1 aa440 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[3-113] | Sigma54_activat[136-300] | AAA_lid_14[306-375] | HTH_8[397-437]
- Domain count: 4
- Matched identifier: RROC_0334040
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Sigma54_activat 136-300 ; Sigma54_activat 136-300 ; AAA_lid_14 306-375 ; AAA_lid_14 306-375 ; HTH_8 397-437 ; HTH_8 397-437
Cluster members and taxonomy
Representative gene: GCF_000449005#QCE_RS08590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007001155
AssemblyASM700115v1 · Contighaploid
Genome composition4 062 261 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 46 · RR 53CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key