1 Response_reg#1
9-118 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:9:5.82e-31:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N69_RS04545
Response regulator OmpR family
Clostridioides difficile · GCF_007000965
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007000965#D1N69_RS04545Stable P2CS identifier used across views.
GenomeGCF_007000965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:156:3.83e-29:232:77:77- Raw architecture: Response_reg:9:5.82e-31:118:111:111#Trans_reg_C:156:3.83e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007000965::NZ_QWUR01000003.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span237095-239253Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N69_04545RefSeq proteinWP_172617373.1
Context group ID
GCF_007000965::NZ_QWUR01000003.1::G00033Context members
D1N69_RS04540D1N69_RS04545
Partner locus tags
D1N69_RS04540D1N69_RS04545
Partner old locus tags
D1N69_04540D1N69_04545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_172617373.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N69_RS04545Primary locus identifier stored in the genes table.
Old locus tagD1N69_04545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUR01000003.1Sequence record reported by the local genomic context database.
Genomic interval238 546-239 253 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span237 095-239 253 ntGCF_007000965::NZ_QWUR01000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000965::NZ_QWUR01000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUR01000003.1All displayed genes belong to this local TCS context.
Neighborhood span237 095-239 253 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
237 095 nt239 253 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N69_RS04540GCF_007000965#D1N69_RS04540
HKClassic
237 095-238 501 nt · Reverse (-)
D1N69_RS04545GCF_007000965#D1N69_RS04545
RROmpRCurrent focus
238 546-239 253 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007000845#D1N73_RS17750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1026421
Simplified PFAM architecture for RROC_1026421
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1026421
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_007000845#D1N73_RS17750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000965
AssemblyASM700096v1 · Contighaploid
Genome composition4 178 186 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key