1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:2.17e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N67_RS01105
Response regulator OmpR family
Clostridioides difficile · GCF_007000945
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007000945#D1N67_RS01105Stable P2CS identifier used across views.
GenomeGCF_007000945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-221 aa · 78 aa · 34.2% of protein
Raw token
Trans_reg_C:144:1.09e-29:221:78:77- Raw architecture: Response_reg:4:2.17e-34:113:111:111#Trans_reg_C:144:1.09e-29:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007000945::NZ_QWUT01000004.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34875-36537Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N67_01105RefSeq proteinWP_003434895.1
Context group ID
GCF_007000945::NZ_QWUT01000004.1::G00042Context members
D1N67_RS01105D1N67_RS01110
Partner locus tags
D1N67_RS01105D1N67_RS01110
Partner old locus tags
D1N67_01105D1N67_01110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003434895.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N8D6Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N8D6_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N67_RS01105Primary locus identifier stored in the genes table.
Old locus tagD1N67_01105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUT01000004.1Sequence record reported by the local genomic context database.
Genomic interval34 875-35 561 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 875-36 537 ntGCF_007000945::NZ_QWUT01000004.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000945::NZ_QWUT01000004.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUT01000004.1All displayed genes belong to this local TCS context.
Neighborhood span34 875-36 537 nt1 663 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 875 nt36 537 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N67_RS01105GCF_007000945#D1N67_RS01105
RROmpRCurrent focus
34 875-35 561 nt · Forward (+)
D1N67_RS01110GCF_007000945#D1N67_RS01110
HKClassic
35 548-36 537 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0218300Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301498
Simplified PFAM architecture for RROC_1301498
PFAM domain coverage: 188 / 228 aa (82.5%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-221]
- Domain count: 2
- Matched identifier: RROC_1301498
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-221 ; Trans_reg_C 144-221
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0218300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000945
AssemblyASM700094v1 · Contighaploid
Genome composition4 078 977 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key