1 Response_reg#1
6-120 aa · 115 aa · 55.8% of protein
Raw token
Response_reg:6:1.77e-18:120:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N68_RS18005
Response regulator NarL family
Clostridioides difficile · GCF_007000925
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007000925#D1N68_RS18005Stable P2CS identifier used across views.
GenomeGCF_007000925Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 206 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
140-196 aa · 57 aa · 27.7% of protein
Raw token
HTH_LUXR:140:2.17e-17:196:57:58- Raw architecture: Response_reg:6:1.77e-18:120:116:111#HTH_LUXR:140:2.17e-17:196:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007000925::NZ_QWUS01000433.1::G00034
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1185-1805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N68_18030RefSeq proteinWP_021367272.1
Context group ID
GCF_007000925::NZ_QWUS01000433.1::G00034Context members
D1N68_RS18005
Partner locus tags
D1N68_RS18005
Partner old locus tags
D1N68_18030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021367272.1Primary protein accession used for annex mappings.
UniProt accessionA0A069A3M4Primary UniProt accession resolved in the annex database.
UniProt IDA0A069A3M4_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N68_RS18005Primary locus identifier stored in the genes table.
Old locus tagD1N68_18030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUS01000433.1Sequence record reported by the local genomic context database.
Genomic interval1 185-1 805 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 185-1 805 ntGCF_007000925::NZ_QWUS01000433.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000925::NZ_QWUS01000433.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUS01000433.1All displayed genes belong to this local TCS context.
Neighborhood span1 185-1 805 nt621 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 185 nt1 805 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N68_RS18005GCF_007000925#D1N68_RS18005
RRNarLCurrent focus
1 185-1 805 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449705#QGM_RS16195Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081561
Simplified PFAM architecture for RROC_2081561
PFAM domain coverage: 169 / 206 aa (82.0%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-119] | GerE[142-196]
- Domain count: 2
- Matched identifier: RROC_2081561
- Positioned domains: Response_reg 6-119 ; Response_reg 6-119 ; GerE 142-196 ; GerE 142-196
Cluster members and taxonomy
Representative gene: GCF_000449705#QGM_RS16195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000925
AssemblyASM700092v1 · Contighaploid
Genome composition4 080 246 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 44 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key