1 Response_reg#1
11-125 aa · 115 aa · 42.0% of protein
Raw token
Response_reg:11:2.88e-23:125:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N72_RS02035
Response regulator Spo0A family
Clostridioides difficile · GCF_007000885
ClassRRTypeSpo0ALength274 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007000885#D1N72_RS02035Stable P2CS identifier used across views.
GenomeGCF_007000885Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length274 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 274 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Spo0A_C#2
163-266 aa · 104 aa · 38.0% of protein
Raw token
Spo0A_C:163:7.27e-66:266:104:104- Raw architecture: Response_reg:11:2.88e-23:125:115:111#Spo0A_C:163:7.27e-66:266:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007000885::NZ_QWUO01000002.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span125656-126480Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N72_02035RefSeq proteinWP_003424711.1
Context group ID
GCF_007000885::NZ_QWUO01000002.1::G00028Context members
D1N72_RS02035
Partner locus tags
D1N72_RS02035
Partner old locus tags
D1N72_02035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003424711.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N5N4Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N5N4_CLODCDisplay identifier provided by UniProt.
GO / PubMed9 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N72_RS02035Primary locus identifier stored in the genes table.
Old locus tagD1N72_02035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUO01000002.1Sequence record reported by the local genomic context database.
Genomic interval125 656-126 480 nt825 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span125 656-126 480 ntGCF_007000885::NZ_QWUO01000002.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000885::NZ_QWUO01000002.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span125 656-126 480 nt825 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
125 656 nt126 480 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N72_RS02035GCF_007000885#D1N72_RS02035
RRSpo0ACurrent focus
125 656-126 480 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0205845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0606259
Simplified PFAM architecture for RROC_0606259
PFAM domain coverage: 218 / 274 aa (79.6%)
1 aa274 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[11-124] | Spo0A_C[163-266]
- Domain count: 2
- Matched identifier: RROC_0606259
- Positioned domains: Response_reg 11-124 ; Response_reg 11-124 ; Spo0A_C 163-266 ; Spo0A_C 163-266
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0205845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000885
AssemblyASM700088v1 · Contighaploid
Genome composition4 152 832 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key