1 HisKA#1
112-172 aa · 61 aa · 18.6% of protein
Raw token
HisKA:112:0.00000889:172:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N74_RS12970
Histidine kinase, Classic
Clostridioides difficile · GCF_007000825
ClassHKTypeClassicLength328 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007000825#D1N74_RS12970Stable P2CS identifier used across views.
GenomeGCF_007000825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length328 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 328 aa (51.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa328 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
218-325 aa · 108 aa · 32.9% of protein
Raw token
HATPase_c:218:3.47e-25:325:108:109- Raw architecture: HisKA:112:0.00000889:172:63:64#HATPase_c:218:3.47e-25:325:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007000825::NZ_QWUM01000194.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span6354-7340Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N74_12965RefSeq proteinWP_142799779.1
Context group ID
GCF_007000825::NZ_QWUM01000194.1::G00016Context members
D1N74_RS12970
Partner locus tags
D1N74_RS12970
Partner old locus tags
D1N74_12965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142799779.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N74_RS12970Primary locus identifier stored in the genes table.
Old locus tagD1N74_12965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUM01000194.1Sequence record reported by the local genomic context database.
Genomic interval6 354-7 340 nt987 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 354-7 340 ntGCF_007000825::NZ_QWUM01000194.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000825::NZ_QWUM01000194.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUM01000194.1All displayed genes belong to this local TCS context.
Neighborhood span6 354-7 340 nt987 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 354 nt7 340 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N74_RS12970GCF_007000825#D1N74_RS12970
HKClassicCurrent focus
6 354-7 340 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155025#UAB_RS0208590Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849762
Simplified PFAM architecture for HKOC_2849762
PFAM domain coverage: 108 / 334 aa (32.3%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-331]
- Domain count: 1
- Matched identifier: HKOC_2849762
- Positioned domains: HATPase_c 224-331
Cluster members and taxonomy
Representative gene: GCF_000155025#UAB_RS0208590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000825
AssemblyASM700082v1 · Contighaploid
Genome composition4 145 098 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key