1 HisKA_3#1
123-188 aa · 66 aa · 20.5% of protein
Raw token
HisKA_3:123:3.72e-20:188:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N74_RS09850
Histidine kinase, Classic
Clostridioides difficile · GCF_007000825
ClassHKTypeClassicLength322 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007000825#D1N74_RS09850Stable P2CS identifier used across views.
GenomeGCF_007000825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length322 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 322 aa (46.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa322 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
229-313 aa · 85 aa · 26.4% of protein
Raw token
HATPase_c:229:0.000000000147:313:104:109- Raw architecture: HisKA_3:123:3.72e-20:188:67:68#HATPase_c:229:0.000000000147:313:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007000825::NZ_QWUM01000121.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8630-10240Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N74_09845RefSeq proteinWP_074428949.1
Context group ID
GCF_007000825::NZ_QWUM01000121.1::G00006Context members
D1N74_RS09845D1N74_RS09850
Partner locus tags
D1N74_RS09845D1N74_RS09850
Partner old locus tags
D1N74_09840D1N74_09845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074428949.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N74_RS09850Primary locus identifier stored in the genes table.
Old locus tagD1N74_09845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUM01000121.1Sequence record reported by the local genomic context database.
Genomic interval9 270-10 240 nt971 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 630-10 240 ntGCF_007000825::NZ_QWUM01000121.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000825::NZ_QWUM01000121.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUM01000121.1All displayed genes belong to this local TCS context.
Neighborhood span8 630-10 240 nt1 611 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 630 nt10 240 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N74_RS09845GCF_007000825#D1N74_RS09845
RRNarL
8 630-9 277 nt · Reverse (-)
D1N74_RS09850GCF_007000825#D1N74_RS09850
HKClassicCurrent focus
9 270-10 240 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS07055Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550063
Simplified PFAM architecture for HKOC_2550063
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550063
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS07055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000825
AssemblyASM700082v1 · Contighaploid
Genome composition4 145 098 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key