1 Response_reg#1
6-116 aa · 111 aa · 48.1% of protein
Raw token
Response_reg:6:8.38e-36:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N74_RS00345
Response regulator OmpR family
Clostridioides difficile · GCF_007000825
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007000825#D1N74_RS00345Stable P2CS identifier used across views.
GenomeGCF_007000825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 231 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:148:4.94e-25:224:77:77- Raw architecture: Response_reg:6:8.38e-36:116:112:111#Trans_reg_C:148:4.94e-25:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007000825::NZ_QWUM01000002.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8485-10547Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N74_00345RefSeq proteinWP_009901663.1
Context group ID
GCF_007000825::NZ_QWUM01000002.1::G00031Context members
D1N74_RS00345D1N74_RS00350
Partner locus tags
D1N74_RS00345D1N74_RS00350
Partner old locus tags
D1N74_00345D1N74_00350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009901663.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74QDA2Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74QDA2_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N74_RS00345Primary locus identifier stored in the genes table.
Old locus tagD1N74_00345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUM01000002.1Sequence record reported by the local genomic context database.
Genomic interval8 485-9 180 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 485-10 547 ntGCF_007000825::NZ_QWUM01000002.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000825::NZ_QWUM01000002.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span8 485-10 547 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 485 nt10 547 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N74_RS00345GCF_007000825#D1N74_RS00345
RROmpRCurrent focus
8 485-9 180 nt · Forward (+)
D1N74_RS00350GCF_007000825#D1N74_RS00350
HKClassic
9 177-10 547 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155025#UAB_RS0201845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158115
Simplified PFAM architecture for RROC_1158115
PFAM domain coverage: 187 / 231 aa (81.0%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[148-224]
- Domain count: 2
- Matched identifier: RROC_1158115
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 148-224 ; Trans_reg_C 148-224
Cluster members and taxonomy
Representative gene: GCF_000155025#UAB_RS0201845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000825
AssemblyASM700082v1 · Contighaploid
Genome composition4 145 098 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key