1 HAMP#1
35-103 aa · 69 aa · 20.5% of protein
Raw token
HAMP:35:0.000000404:103:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N76_RS19135
Histidine kinase, Classic
Clostridioides difficile · GCF_007000785
ClassHKTypeClassicLength337 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007000785#D1N76_RS19135Stable P2CS identifier used across views.
GenomeGCF_007000785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 337 aa (67.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation3 items
2 HisKA#2
115-168 aa · 54 aa · 16.0% of protein
Raw token
HisKA:115:0.0000000428:168:54:643 HATPase_c#3
229-333 aa · 105 aa · 31.2% of protein
Raw token
HATPase_c:229:3.12e-20:333:106:109- Raw architecture: HAMP:35:0.000000404:103:70:69#HisKA:115:0.0000000428:168:54:64#HATPase_c:229:3.12e-20:333:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007000785::NZ_QWUK01000852.1::G00051
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span186-1199Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N76_19195RefSeq proteinWP_142822098.1
Context group ID
GCF_007000785::NZ_QWUK01000852.1::G00051Context members
D1N76_RS19135
Partner locus tags
D1N76_RS19135
Partner old locus tags
D1N76_19195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142822098.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N76_RS19135Primary locus identifier stored in the genes table.
Old locus tagD1N76_19195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUK01000852.1Sequence record reported by the local genomic context database.
Genomic interval186-1 199 nt1 014 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span186-1 199 ntGCF_007000785::NZ_QWUK01000852.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000785::NZ_QWUK01000852.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUK01000852.1All displayed genes belong to this local TCS context.
Neighborhood span186-1 199 nt1 014 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
186 nt1 199 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N76_RS19135GCF_007000785#D1N76_RS19135
HKClassicCurrent focus
186-1 199 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448805#QKI_RS02875Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2557911
Simplified PFAM architecture for HKOC_2557911
PFAM domain coverage: 219 / 386 aa (56.7%)
1 aa386 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[106-151] | HisKA[164-231] | HATPase_c[278-382]
- Domain count: 3
- Matched identifier: HKOC_2557911
- Positioned domains: HAMP 106-151 ; HisKA 164-231 ; HATPase_c 278-382
Cluster members and taxonomy
Representative gene: GCF_000448805#QKI_RS02875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000785
AssemblyASM700078v1 · Contighaploid
Genome composition4 119 768 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 91 · HK 36 · RR 50CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key