1 PAS_9#1
9-108 aa · 100 aa · 29.2% of protein
Raw token
PAS_9:9:0.00000139:108:103:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N76_RS07025
Histidine kinase, Classic
Clostridioides difficile · GCF_007000785
ClassHKTypeClassicLength342 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007000785#D1N76_RS07025Stable P2CS identifier used across views.
GenomeGCF_007000785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length342 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage271 / 342 aa (79.2%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa342 aa
Domain-by-domain annotation3 items
2 HisKA#2
115-181 aa · 67 aa · 19.6% of protein
Raw token
HisKA:115:1.14e-18:181:67:643 HATPase_c#3
232-335 aa · 104 aa · 30.4% of protein
Raw token
HATPase_c:232:4.4e-30:335:104:109- Raw architecture: PAS_9:9:0.00000139:108:103:102#HisKA:115:1.14e-18:181:67:64#HATPase_c:232:4.4e-30:335:104:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007000785::NZ_QWUK01000118.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1030Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N76_07045RefSeq proteinWP_142821714.1
Context group ID
GCF_007000785::NZ_QWUK01000118.1::G00006Context members
D1N76_RS07025
Partner locus tags
D1N76_RS07025
Partner old locus tags
D1N76_07045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142821714.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N76_RS07025Primary locus identifier stored in the genes table.
Old locus tagD1N76_07045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUK01000118.1Sequence record reported by the local genomic context database.
Genomic interval1-1 030 nt1 030 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 030 ntGCF_007000785::NZ_QWUK01000118.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000785::NZ_QWUK01000118.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUK01000118.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 030 nt1 030 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 030 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N76_RS07025GCF_007000785#D1N76_RS07025
HKClassicCurrent focus
1-1 030 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0213315Use this link to inspect the representative gene detail.
PFAM architectureHAMP + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2180212
Simplified PFAM architecture for HKOC_2180212
PFAM domain coverage: 324 / 429 aa (75.5%)
1 aa429 aa
HAMPPASHisKAHATPase_c
- Simplified architecture: HAMP + PAS + HisKA + HATPase_c
- Raw architecture: HAMP[30-74] | PAS[87-193] | HisKA[202-267] | HATPase_c[317-422]
- Domain count: 4
- Matched identifier: HKOC_2180212
- Positioned domains: HAMP 30-74 ; PAS 87-193 ; HisKA 202-267 ; HATPase_c 317-422
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0213315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000785
AssemblyASM700078v1 · Contighaploid
Genome composition4 119 768 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 91 · HK 36 · RR 50CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key