1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.0000000037:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N78_RS05845
Histidine kinase, Classic
Clostridioides difficile · GCF_007000775
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_007000775#D1N78_RS05845Stable P2CS identifier used across views.
GenomeGCF_007000775Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 671 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
565-668 aa · 104 aa · 15.5% of protein
Raw token
HATPase_c:565:3.82e-30:668:104:109- Raw architecture: HisKA:449:0.0000000037:514:66:64#HATPase_c:565:3.82e-30:668:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_007000775::NZ_QWUI01000070.1::G00048
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span8055-11549Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N78_05835RefSeq proteinWP_016728507.1
Context group ID
GCF_007000775::NZ_QWUI01000070.1::G00048Context members
D1N78_RS05840D1N78_RS05845D1N78_RS05850
Partner locus tags
D1N78_RS05840D1N78_RS05845D1N78_RS05850
Partner old locus tags
D1N78_05830D1N78_05835D1N78_05840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016728507.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N78_RS05845Primary locus identifier stored in the genes table.
Old locus tagD1N78_05835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUI01000070.1Sequence record reported by the local genomic context database.
Genomic interval8 785-10 800 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 055-11 549 ntGCF_007000775::NZ_QWUI01000070.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000775::NZ_QWUI01000070.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUI01000070.1All displayed genes belong to this local TCS context.
Neighborhood span8 055-11 549 nt3 495 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 055 nt11 549 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
D1N78_RS05840GCF_007000775#D1N78_RS05840
RROmpR
8 055-8 735 nt · Reverse (-)
D1N78_RS05845GCF_007000775#D1N78_RS05845
HKClassicCurrent focus
8 785-10 800 nt · Reverse (-)
D1N78_RS05850GCF_007000775#D1N78_RS05850
RROmpR
10 872-11 549 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021284485#LWE75_RS13820Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0832255
Simplified PFAM architecture for HKOC_0832255
PFAM domain coverage: 170 / 675 aa (25.2%)
1 aa675 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[454-518] | HATPase_c[567-671]
- Domain count: 2
- Matched identifier: HKOC_0832255
- Positioned domains: HisKA 454-518 ; HATPase_c 567-671
Cluster members and taxonomy
Representative gene: GCF_021284485#LWE75_RS13820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000775
AssemblyASM700077v1 · Contighaploid
Genome composition3 958 740 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 44 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key