1 Response_reg#1
3-114 aa · 112 aa · 70.0% of protein
Raw token
Response_reg:3:7.82e-26:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N85_RS19700
Response regulator, CheY family
Clostridioides difficile · GCF_007000615
ClassRRTypeCheYLength160 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007000615#D1N85_RS19700Stable P2CS identifier used across views.
GenomeGCF_007000615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length160 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 160 aa (70.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa160 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:7.82e-26:114:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007000615::NZ_QWUB01000853.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span509-988Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N85_19725RefSeq proteinWP_142798462.1
Context group ID
GCF_007000615::NZ_QWUB01000853.1::G00058Context members
D1N85_RS19700
Partner locus tags
D1N85_RS19700
Partner old locus tags
D1N85_19725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142798462.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N85_RS19700Primary locus identifier stored in the genes table.
Old locus tagD1N85_19725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUB01000853.1Sequence record reported by the local genomic context database.
Genomic interval509-988 nt480 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span509-988 ntGCF_007000615::NZ_QWUB01000853.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000615::NZ_QWUB01000853.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUB01000853.1All displayed genes belong to this local TCS context.
Neighborhood span509-988 nt480 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
509 nt988 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N85_RS19700GCF_007000615#D1N85_RS19700
RRCheYCurrent focus
509-988 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302125#BGU89_RS14310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0313110
Simplified PFAM architecture for RROC_0313110
PFAM domain coverage: 386 / 445 aa (86.7%)
1 aa445 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[3-113] | Sigma54_activat[137-300] | AAA_lid_14[306-375] | HTH_8[397-437]
- Domain count: 4
- Matched identifier: RROC_0313110
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Sigma54_activat 137-300 ; Sigma54_activat 137-300 ; AAA_lid_14 306-375 ; AAA_lid_14 306-375 ; HTH_8 397-437 ; HTH_8 397-437
Cluster members and taxonomy
Representative gene: GCF_002302125#BGU89_RS14310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000615
AssemblyASM700061v1 · Contighaploid
Genome composition4 069 384 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 45 · RR 52CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key