1 Response_reg#1
5-114 aa · 110 aa · 61.8% of protein
Raw token
Response_reg:5:1.21e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N85_RS14925
Response regulator, unclassified
Clostridioides difficile · GCF_007000615
ClassRRTypeunclassifiedLength178 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_007000615#D1N85_RS14925Stable P2CS identifier used across views.
GenomeGCF_007000615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length178 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 178 aa (61.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa178 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.21e-23:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_007000615::NZ_QWUB01000412.1::G00032
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span134-3482Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N85_14935RefSeq proteinWP_142798084.1
Context group ID
GCF_007000615::NZ_QWUB01000412.1::G00032Context members
D1N85_RS14915D1N85_RS14920D1N85_RS14925
Partner locus tags
D1N85_RS14915D1N85_RS14920D1N85_RS14925
Partner old locus tags
D1N85_14925D1N85_14930D1N85_14935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142798084.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N85_RS14925Primary locus identifier stored in the genes table.
Old locus tagD1N85_14935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUB01000412.1Sequence record reported by the local genomic context database.
Genomic interval2 948-3 482 nt535 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span134-3 482 ntGCF_007000615::NZ_QWUB01000412.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000615::NZ_QWUB01000412.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUB01000412.1All displayed genes belong to this local TCS context.
Neighborhood span134-3 482 nt3 349 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 nt3 482 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
D1N85_RS14915GCF_007000615#D1N85_RS14915
RROmpR
134-811 nt · Forward (+)
D1N85_RS14920GCF_007000615#D1N85_RS14920
HKClassic
883-2 898 nt · Forward (+)
D1N85_RS14925GCF_007000615#D1N85_RS14925
RRunclassifiedCurrent focus
2 948-3 482 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS17365Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407979
Simplified PFAM architecture for RROC_1407979
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407979
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS17365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000615
AssemblyASM700061v1 · Contighaploid
Genome composition4 069 384 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 45 · RR 52CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key