1 HisKA#1
196-260 aa · 65 aa · 15.4% of protein
Raw token
HisKA:196:0.0000000000175:260:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N85_RS12145
Histidine kinase, Classic
Clostridioides difficile · GCF_007000615
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007000615#D1N85_RS12145Stable P2CS identifier used across views.
GenomeGCF_007000615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 421 aa (42.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
307-421 aa · 115 aa · 27.3% of protein
Raw token
HATPase_c:307:3.91e-18:421:118:109- Raw architecture: HisKA:196:0.0000000000175:260:65:64#HATPase_c:307:3.91e-18:421:118:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007000615::NZ_QWUB01000281.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1914Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N85_12145RefSeq proteinWP_142797975.1
Context group ID
GCF_007000615::NZ_QWUB01000281.1::G00021Context members
D1N85_RS12145D1N85_RS12150
Partner locus tags
D1N85_RS12145D1N85_RS12150
Partner old locus tags
D1N85_12145D1N85_12150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142797975.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N85_RS12145Primary locus identifier stored in the genes table.
Old locus tagD1N85_12145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUB01000281.1Sequence record reported by the local genomic context database.
Genomic interval1-1 262 nt1 262 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 914 ntGCF_007000615::NZ_QWUB01000281.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000615::NZ_QWUB01000281.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUB01000281.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 914 nt1 914 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 914 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D1N85_RS12145GCF_007000615#D1N85_RS12145
HKClassicCurrent focus
1-1 262 nt · Reverse (-)
D1N85_RS12150GCF_007000615#D1N85_RS12150
RROmpR
1 246-1 914 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS11460Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2215987
Simplified PFAM architecture for HKOC_2215987
PFAM domain coverage: 179 / 425 aa (42.1%)
1 aa425 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[197-260] | HATPase_c[308-422]
- Domain count: 2
- Matched identifier: HKOC_2215987
- Positioned domains: HisKA 197-260 ; HATPase_c 308-422
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS11460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000615
AssemblyASM700061v1 · Contighaploid
Genome composition4 069 384 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 45 · RR 52CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key