1 HisKA#1
80-145 aa · 66 aa · 22.1% of protein
Raw token
HisKA:80:0.000000182:145:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D1N85_RS06300
Histidine kinase, Classic
Clostridioides difficile · GCF_007000615
ClassHKTypeClassicLength299 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_007000615#D1N85_RS06300Stable P2CS identifier used across views.
GenomeGCF_007000615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 299 aa (55.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-297 aa · 101 aa · 33.8% of protein
Raw token
HATPase_c:197:9.67e-25:297:101:109- Raw architecture: HisKA:80:0.000000182:145:66:64#HATPase_c:197:9.67e-25:297:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_007000615::NZ_QWUB01000091.1::G00062
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span8134-9034Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD1N85_06300RefSeq proteinWP_142797814.1
Context group ID
GCF_007000615::NZ_QWUB01000091.1::G00062Context members
D1N85_RS06300
Partner locus tags
D1N85_RS06300
Partner old locus tags
D1N85_06300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_142797814.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD1N85_RS06300Primary locus identifier stored in the genes table.
Old locus tagD1N85_06300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QWUB01000091.1Sequence record reported by the local genomic context database.
Genomic interval8 134-9 034 nt901 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 134-9 034 ntGCF_007000615::NZ_QWUB01000091.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000615::NZ_QWUB01000091.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QWUB01000091.1All displayed genes belong to this local TCS context.
Neighborhood span8 134-9 034 nt901 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 134 nt9 034 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D1N85_RS06300GCF_007000615#D1N85_RS06300
HKClassicCurrent focus
8 134-9 034 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0109615Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827844
Simplified PFAM architecture for HKOC_2827844
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[236-342]
- Domain count: 2
- Matched identifier: HKOC_2827844
- Positioned domains: HisKA 124-189 ; HATPase_c 236-342
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0109615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000615
AssemblyASM700061v1 · Contighaploid
Genome composition4 069 384 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 45 · RR 52CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key