1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:4.99e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EWL72_RS00940
Response regulator OmpR family
Clostridioides difficile · GCF_007000385
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007000385#EWL72_RS00940Stable P2CS identifier used across views.
GenomeGCF_007000385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:151:5.9e-32:227:77:77- Raw architecture: Response_reg:4:4.99e-28:113:111:111#Trans_reg_C:151:5.9e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007000385::NZ_SERN01000001.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span216389-218412Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEWL72_00940RefSeq proteinWP_011861589.1
Context group ID
GCF_007000385::NZ_SERN01000001.1::G00020Context members
EWL72_RS00940EWL72_RS00945
Partner locus tags
EWL72_RS00940EWL72_RS00945
Partner old locus tags
EWL72_00940EWL72_00945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011861589.1Primary protein accession used for annex mappings.
UniProt accessionQ182M4Primary UniProt accession resolved in the annex database.
UniProt IDQ182M4_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEWL72_RS00940Primary locus identifier stored in the genes table.
Old locus tagEWL72_00940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SERN01000001.1Sequence record reported by the local genomic context database.
Genomic interval216 389-217 096 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span216 389-218 412 ntGCF_007000385::NZ_SERN01000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000385::NZ_SERN01000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SERN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span216 389-218 412 nt2 024 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 389 nt218 412 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EWL72_RS00940GCF_007000385#EWL72_RS00940
RROmpRCurrent focus
216 389-217 096 nt · Forward (+)
EWL72_RS00945GCF_007000385#EWL72_RS00945
HKClassic
217 090-218 412 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS13605Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016405
Simplified PFAM architecture for RROC_1016405
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1016405
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS13605
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 69 total members. Page 1 / 2.
GCF_000009205#CD630_RS13605 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000385
AssemblyASM700038v1 · Contighaploid
Genome composition4 186 862 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key