1 Response_reg#1
9-118 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:9:6.3e-31:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EWL74_RS10870
Response regulator OmpR family
Clostridioides difficile · GCF_007000285
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007000285#EWL74_RS10870Stable P2CS identifier used across views.
GenomeGCF_007000285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:156:2.21e-29:232:77:77- Raw architecture: Response_reg:9:6.3e-31:118:111:111#Trans_reg_C:156:2.21e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007000285::NZ_SERP01000006.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53376-55534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEWL74_10870RefSeq proteinWP_021402347.1
Context group ID
GCF_007000285::NZ_SERP01000006.1::G00051Context members
EWL74_RS10870EWL74_RS10875
Partner locus tags
EWL74_RS10870EWL74_RS10875
Partner old locus tags
EWL74_10870EWL74_10875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021402347.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEWL74_RS10870Primary locus identifier stored in the genes table.
Old locus tagEWL74_10870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SERP01000006.1Sequence record reported by the local genomic context database.
Genomic interval53 376-54 083 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 376-55 534 ntGCF_007000285::NZ_SERP01000006.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000285::NZ_SERP01000006.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SERP01000006.1All displayed genes belong to this local TCS context.
Neighborhood span53 376-55 534 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 376 nt55 534 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EWL74_RS10870GCF_007000285#EWL74_RS10870
RROmpRCurrent focus
53 376-54 083 nt · Forward (+)
EWL74_RS10875GCF_007000285#EWL74_RS10875
HKClassic
54 128-55 534 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450445#QKY_RS03185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1018271
Simplified PFAM architecture for RROC_1018271
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1018271
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000450445#QKY_RS03185
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 40 over 40 total members. Page 1 / 1.
GCF_000450445#QKY_RS03185 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000285
AssemblyASM700028v1 · Contighaploid
Genome composition4 191 821 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key