1 Response_reg#1
9-117 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:9:5.58e-32:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EWL74_RS05065
Response regulator OmpR family
Clostridioides difficile · GCF_007000285
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_007000285#EWL74_RS05065Stable P2CS identifier used across views.
GenomeGCF_007000285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-231 aa · 76 aa · 32.5% of protein
Raw token
Trans_reg_C:156:5.47e-29:231:76:77- Raw architecture: Response_reg:9:5.58e-32:117:111:111#Trans_reg_C:156:5.47e-29:231:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_007000285::NZ_SERP01000002.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3369-5388Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEWL74_05065RefSeq proteinWP_070538245.1
Context group ID
GCF_007000285::NZ_SERP01000002.1::G00031Context members
EWL74_RS05060EWL74_RS05065
Partner locus tags
EWL74_RS05060EWL74_RS05065
Partner old locus tags
EWL74_05060EWL74_05065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070538245.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEWL74_RS05065Primary locus identifier stored in the genes table.
Old locus tagEWL74_05065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SERP01000002.1Sequence record reported by the local genomic context database.
Genomic interval4 684-5 388 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 369-5 388 ntGCF_007000285::NZ_SERP01000002.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_007000285::NZ_SERP01000002.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SERP01000002.1All displayed genes belong to this local TCS context.
Neighborhood span3 369-5 388 nt2 020 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 369 nt5 388 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EWL74_RS05060GCF_007000285#EWL74_RS05060
HKClassic
3 369-4 691 nt · Reverse (-)
EWL74_RS05065GCF_007000285#EWL74_RS05065
RROmpRCurrent focus
4 684-5 388 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301905#BGU50_RS11700Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053638
Simplified PFAM architecture for RROC_1053638
PFAM domain coverage: 186 / 234 aa (79.5%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1053638
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_002301905#BGU50_RS11700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_007000285
AssemblyASM700028v1 · Contighaploid
Genome composition4 191 821 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key