1 Response_reg#1
34-93 aa · 60 aa · 28.7% of protein
Raw token
Response_reg:34:0.00000000000056:93:62:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA412_RS03525
Response regulator LytTR family
Clostridioides difficile · GCF_006454575
ClassRRTypeLytTRLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_006454575#DA412_RS03525Stable P2CS identifier used across views.
GenomeGCF_006454575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 209 aa (69.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 LytTR#2
114-198 aa · 85 aa · 40.7% of protein
Raw token
LytTR:114:9.17e-19:198:92:98- Raw architecture: Response_reg:34:0.00000000000056:93:62:111#LytTR:114:9.17e-19:198:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_006454575::NZ_PZOW01000002.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span681845-682474Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA412_03525RefSeq proteinWP_235675811.1
Context group ID
GCF_006454575::NZ_PZOW01000002.1::G00012Context members
DA412_RS03525
Partner locus tags
DA412_RS03525
Partner old locus tags
DA412_03525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235675811.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA412_RS03525Primary locus identifier stored in the genes table.
Old locus tagDA412_03525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZOW01000002.1Sequence record reported by the local genomic context database.
Genomic interval681 845-682 474 nt630 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span681 845-682 474 ntGCF_006454575::NZ_PZOW01000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006454575::NZ_PZOW01000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZOW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span681 845-682 474 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
681 845 nt682 474 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DA412_RS03525GCF_006454575#DA412_RS03525
RRLytTRCurrent focus
681 845-682 474 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006454575#DA412_RS03525The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2046265
Simplified PFAM architecture for RROC_2046265
PFAM domain coverage: 145 / 209 aa (69.4%)
1 aa209 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[32-92] | LytTR[115-198]
- Domain count: 2
- Matched identifier: RROC_2046265
- Positioned domains: Response_reg 32-92 ; Response_reg 32-92 ; LytTR 115-198 ; LytTR 115-198
Cluster members and taxonomy
Representative gene: GCF_006454575#DA412_RS03525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006454575
AssemblyASM645457v1 · Contighaploid
Genome composition4 146 187 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key