1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:5.83e-29:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA411_RS15815
Response regulator OmpR family
Clostridioides difficile · GCF_006408335
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006408335#DA411_RS15815Stable P2CS identifier used across views.
GenomeGCF_006408335Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:149:1.67e-19:223:76:77- Raw architecture: Response_reg:3:5.83e-29:115:113:111#Trans_reg_C:149:1.67e-19:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006408335::NZ_PZOS01000003.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3287864-3289836Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA411_15820RefSeq proteinWP_005342376.1
Context group ID
GCF_006408335::NZ_PZOS01000003.1::G00053Context members
DA411_RS15815DA411_RS15820
Partner locus tags
DA411_RS15815DA411_RS15820
Partner old locus tags
DA411_15820DA411_15825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005342376.1Primary protein accession used for annex mappings.
UniProt accessionA0A414D0L8Primary UniProt accession resolved in the annex database.
UniProt IDA0A414D0L8_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA411_RS15815Primary locus identifier stored in the genes table.
Old locus tagDA411_15820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZOS01000003.1Sequence record reported by the local genomic context database.
Genomic interval3 287 864-3 288 550 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 287 864-3 289 836 ntGCF_006408335::NZ_PZOS01000003.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006408335::NZ_PZOS01000003.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZOS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span3 287 864-3 289 836 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 287 864 nt3 289 836 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DA411_RS15815GCF_006408335#DA411_RS15815
RROmpRCurrent focus
3 287 864-3 288 550 nt · Forward (+)
DA411_RS15820GCF_006408335#DA411_RS15820
HKClassic
3 288 544-3 289 836 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003439255#DXB36_RS14635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314854
Simplified PFAM architecture for RROC_1314854
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1314854
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_003439255#DXB36_RS14635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006408335
AssemblyASM640833v1 · Contighaploid
Genome composition4 361 487 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 113 · HK 54 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key