1 Response_reg#1
4-109 aa · 106 aa · 48.2% of protein
Raw token
Response_reg:4:8.77e-27:109:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA411_RS12125
Response regulator OmpR family
Clostridioides difficile · GCF_006408335
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_006408335#DA411_RS12125Stable P2CS identifier used across views.
GenomeGCF_006408335Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-217 aa · 76 aa · 34.5% of protein
Raw token
Trans_reg_C:142:1.67e-21:217:77:77- Raw architecture: Response_reg:4:8.77e-27:109:110:111#Trans_reg_C:142:1.67e-21:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_006408335::NZ_PZOS01000003.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2452378-2453040Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA411_12120RefSeq proteinWP_028088146.1
Context group ID
GCF_006408335::NZ_PZOS01000003.1::G00043Context members
DA411_RS12125
Partner locus tags
DA411_RS12125
Partner old locus tags
DA411_12120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_028088146.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1EJS9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1EJS9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA411_RS12125Primary locus identifier stored in the genes table.
Old locus tagDA411_12120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZOS01000003.1Sequence record reported by the local genomic context database.
Genomic interval2 452 378-2 453 040 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 452 378-2 453 040 ntGCF_006408335::NZ_PZOS01000003.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006408335::NZ_PZOS01000003.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZOS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span2 452 378-2 453 040 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 452 378 nt2 453 040 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DA411_RS12125GCF_006408335#DA411_RS12125
RROmpRCurrent focus
2 452 378-2 453 040 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424345#G617_RS0115750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1724539
Simplified PFAM architecture for RROC_1724539
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-109] | Trans_reg_C[143-217]
- Domain count: 2
- Matched identifier: RROC_1724539
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; Trans_reg_C 143-217 ; Trans_reg_C 143-217
Cluster members and taxonomy
Representative gene: GCF_000424345#G617_RS0115750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006408335
AssemblyASM640833v1 · Contighaploid
Genome composition4 361 487 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 113 · HK 54 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key