1 H_kinase_N#1
5-135 aa · 131 aa · 28.4% of protein
Raw token
H_kinase_N:5:1.63e-36:135:132:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA404_RS09850
Histidine kinase, Classic
Clostridioides difficile · GCF_006408325
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006408325#DA404_RS09850Stable P2CS identifier used across views.
GenomeGCF_006408325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
H_kinase_NHisKA_2HATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 462 aa (65.8%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation3 items
2 HisKA_2#2
269-343 aa · 75 aa · 16.2% of protein
Raw token
HisKA_2:269:2.52e-16:343:76:763 HATPase_c#3
363-460 aa · 98 aa · 21.2% of protein
Raw token
HATPase_c:363:0.0000001:460:114:109- Raw architecture: H_kinase_N:5:1.63e-36:135:132:139#HisKA_2:269:2.52e-16:343:76:76#HATPase_c:363:0.0000001:460:114:109
- Domain description: 1 H_kinase_N,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006408325::NZ_PZOR01000001.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2163220-2165196Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA404_09855RefSeq proteinWP_330574846.1
Context group ID
GCF_006408325::NZ_PZOR01000001.1::G00028Context members
DA404_RS09850DA404_RS09855
Partner locus tags
DA404_RS09850DA404_RS09855
Partner old locus tags
DA404_09855DA404_09860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330574846.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA404_RS09850Primary locus identifier stored in the genes table.
Old locus tagDA404_09855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZOR01000001.1Sequence record reported by the local genomic context database.
Genomic interval2 163 220-2 164 608 nt1 389 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 163 220-2 165 196 ntGCF_006408325::NZ_PZOR01000001.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006408325::NZ_PZOR01000001.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZOR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 163 220-2 165 196 nt1 977 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 163 220 nt2 165 196 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DA404_RS09850GCF_006408325#DA404_RS09850
HKClassicCurrent focus
2 163 220-2 164 608 nt · Reverse (-)
DA404_RS09855GCF_006408325#DA404_RS09855
RRAmiR_NasR
2 164 621-2 165 196 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006408325#DA404_RS09850The current gene is the representative for this cluster.
PFAM architectureGAF_PdtaS + HisKA_2 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1811307
Simplified PFAM architecture for HKOC_1811307
PFAM domain coverage: 298 / 462 aa (64.5%)
1 aa462 aa
GAF_PdtaSHisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[3-134] | HisKA_2[269-340] | HATPase_c[366-459]
- Domain count: 3
- Matched identifier: HKOC_1811307
- Positioned domains: GAF_PdtaS 3-134 ; HisKA_2 269-340 ; HATPase_c 366-459
Cluster members and taxonomy
Representative gene: GCF_006408325#DA404_RS09850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006408325
AssemblyASM640832v1 · Contighaploid
Genome composition4 233 325 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key