1 Response_reg#1
6-120 aa · 115 aa · 42.8% of protein
Raw token
Response_reg:6:3.05e-23:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA084_RS06200
Response regulator Spo0A family
Clostridioides difficile · GCF_006408235
ClassRRTypeSpo0ALength269 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_006408235#DA084_RS06200Stable P2CS identifier used across views.
GenomeGCF_006408235Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length269 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 269 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa269 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
158-261 aa · 104 aa · 38.7% of protein
Raw token
Spo0A_C:158:1.36e-65:261:104:104- Raw architecture: Response_reg:6:3.05e-23:120:115:111#Spo0A_C:158:1.36e-65:261:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_006408235::NZ_PZOM01000001.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1281931-1282764Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA084_06205RefSeq proteinWP_119957378.1
Context group ID
GCF_006408235::NZ_PZOM01000001.1::G00019Context members
DA084_RS06200
Partner locus tags
DA084_RS06200
Partner old locus tags
DA084_06205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119957378.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA084_RS06200Primary locus identifier stored in the genes table.
Old locus tagDA084_06205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZOM01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 281 931-1 282 764 nt834 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 281 931-1 282 764 ntGCF_006408235::NZ_PZOM01000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006408235::NZ_PZOM01000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZOM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 281 931-1 282 764 nt834 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 281 931 nt1 282 764 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DA084_RS06200GCF_006408235#DA084_RS06200
RRSpo0ACurrent focus
1 281 931-1 282 764 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003597895#DA422_RS06200Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0617446
Simplified PFAM architecture for RROC_0617446
PFAM domain coverage: 218 / 269 aa (81.0%)
1 aa269 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-119] | Spo0A_C[158-261]
- Domain count: 2
- Matched identifier: RROC_0617446
- Positioned domains: Response_reg 6-119 ; Response_reg 6-119 ; Spo0A_C 158-261 ; Spo0A_C 158-261
Cluster members and taxonomy
Representative gene: GCF_003597895#DA422_RS06200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006408235
AssemblyASM640823v1 · Contighaploid
Genome composition4 121 087 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 47 · RR 54CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key