1 HisKA#1
166-226 aa · 61 aa · 15.9% of protein
Raw token
HisKA:166:0.000000000000652:226:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA084_RS05190
Histidine kinase, Classic
Clostridioides difficile · GCF_006408235
ClassHKTypeClassicLength384 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006408235#DA084_RS05190Stable P2CS identifier used across views.
GenomeGCF_006408235Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length384 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 384 aa (43.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa384 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
273-378 aa · 106 aa · 27.6% of protein
Raw token
HATPase_c:273:4.85e-27:378:107:109- Raw architecture: HisKA:166:0.000000000000652:226:61:64#HATPase_c:273:4.85e-27:378:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006408235::NZ_PZOM01000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1062655-1064589Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA084_05195RefSeq proteinWP_235675584.1
Context group ID
GCF_006408235::NZ_PZOM01000001.1::G00016Context members
DA084_RS05185DA084_RS05190
Partner locus tags
DA084_RS05185DA084_RS05190
Partner old locus tags
DA084_05190DA084_05195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235675584.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA084_RS05190Primary locus identifier stored in the genes table.
Old locus tagDA084_05195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZOM01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 063 435-1 064 589 nt1 155 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 062 655-1 064 589 ntGCF_006408235::NZ_PZOM01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006408235::NZ_PZOM01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZOM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 062 655-1 064 589 nt1 935 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 062 655 nt1 064 589 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DA084_RS05185GCF_006408235#DA084_RS05185
RROmpR
1 062 655-1 063 338 nt · Forward (+)
DA084_RS05190GCF_006408235#DA084_RS05190
HKClassicCurrent focus
1 063 435-1 064 589 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_006408235#DA084_RS05190The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2574877
Simplified PFAM architecture for HKOC_2574877
PFAM domain coverage: 172 / 384 aa (44.8%)
1 aa384 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[164-226] | HATPase_c[273-381]
- Domain count: 2
- Matched identifier: HKOC_2574877
- Positioned domains: HisKA 164-226 ; HATPase_c 273-381
Cluster members and taxonomy
Representative gene: GCF_006408235#DA084_RS05190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006408235
AssemblyASM640823v1 · Contighaploid
Genome composition4 121 087 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 47 · RR 54CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key