1 Response_reg#1
1-114 aa · 114 aa · 57.0% of protein
Raw token
Response_reg:1:2.69e-17:114:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA427_RS04025
Response regulator NarL family
Clostridioides difficile · GCF_006381025
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_006381025#DA427_RS04025Stable P2CS identifier used across views.
GenomeGCF_006381025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 200 aa (85.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
134-190 aa · 57 aa · 28.5% of protein
Raw token
HTH_LUXR:134:1.33e-17:190:57:58- Raw architecture: Response_reg:1:2.69e-17:114:115:111#HTH_LUXR:134:1.33e-17:190:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_006381025::NZ_PZRH01000001.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span762333-762935Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA427_04015RefSeq proteinWP_009891620.1
Context group ID
GCF_006381025::NZ_PZRH01000001.1::G00011Context members
DA427_RS04025
Partner locus tags
DA427_RS04025
Partner old locus tags
DA427_04015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009891620.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA427_RS04025Primary locus identifier stored in the genes table.
Old locus tagDA427_04015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZRH01000001.1Sequence record reported by the local genomic context database.
Genomic interval762 333-762 935 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span762 333-762 935 ntGCF_006381025::NZ_PZRH01000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006381025::NZ_PZRH01000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZRH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span762 333-762 935 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
762 333 nt762 935 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DA427_RS04025GCF_006381025#DA427_RS04025
RRNarLCurrent focus
762 333-762 935 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2134437
Simplified PFAM architecture for RROC_2134437
PFAM domain coverage: 168 / 200 aa (84.0%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[1-113] | GerE[136-190]
- Domain count: 2
- Matched identifier: RROC_2134437
- Positioned domains: Response_reg 1-113 ; Response_reg 1-113 ; GerE 136-190 ; GerE 136-190
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006381025
AssemblyASM638102v1 · Contighaploid
Genome composition4 204 496 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key