1 HisKA#1
101-166 aa · 66 aa · 20.4% of protein
Raw token
HisKA:101:0.00000000603:166:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA425_RS19795
Histidine kinase, Classic
Clostridioides difficile · GCF_006380995
ClassHKTypeClassicLength323 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006380995#DA425_RS19795Stable P2CS identifier used across views.
GenomeGCF_006380995Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length323 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 323 aa (52.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa323 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
217-320 aa · 104 aa · 32.2% of protein
Raw token
HATPase_c:217:1.62e-30:320:104:109- Raw architecture: HisKA:101:0.00000000603:166:66:64#HATPase_c:217:1.62e-30:320:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006380995::NZ_PZRG01000004.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3585616-3587317Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_006380995::NZ_PZRG01000004.1::G00052Context members
DA425_RS17215DA425_RS19795
Partner locus tags
DA425_RS17215DA425_RS19795
Partner old locus tags
DA425_17230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235665393.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA425_RS19795Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_PZRG01000004.1Sequence record reported by the local genomic context database.
Genomic interval3 586 346-3 587 317 nt972 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 585 616-3 587 317 ntGCF_006380995::NZ_PZRG01000004.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006380995::NZ_PZRG01000004.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZRG01000004.1All displayed genes belong to this local TCS context.
Neighborhood span3 585 616-3 587 317 nt1 702 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 585 616 nt3 587 317 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DA425_RS17215GCF_006380995#DA425_RS17215
RROmpR
3 585 616-3 586 296 nt · Reverse (-)
DA425_RS19795GCF_006380995#DA425_RS19795
HKClassicCurrent focus
3 586 346-3 587 317 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS17370Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842424
Simplified PFAM architecture for HKOC_0842424
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842424
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS17370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006380995
AssemblyASM638099v1 · Contighaploid
Genome composition4 167 354 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key