1 Response_reg#1
3-112 aa · 110 aa · 50.5% of protein
Raw token
Response_reg:3:2.58e-30:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA425_RS08780
Response regulator OmpR family
Clostridioides difficile · GCF_006380995
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006380995#DA425_RS08780Stable P2CS identifier used across views.
GenomeGCF_006380995Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 218 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 33.5% of protein
Raw token
Trans_reg_C:143:2.97e-24:215:78:77- Raw architecture: Response_reg:3:2.58e-30:112:111:111#Trans_reg_C:143:2.97e-24:215:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006380995::NZ_PZRG01000004.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1676917-1678898Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA425_08795RefSeq proteinWP_008790770.1
Context group ID
GCF_006380995::NZ_PZRG01000004.1::G00023Context members
DA425_RS08780DA425_RS08785
Partner locus tags
DA425_RS08780DA425_RS08785
Partner old locus tags
DA425_08795DA425_08800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790770.1Primary protein accession used for annex mappings.
UniProt accessionE7GFZ5Primary UniProt accession resolved in the annex database.
UniProt IDE7GFZ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA425_RS08780Primary locus identifier stored in the genes table.
Old locus tagDA425_08795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZRG01000004.1Sequence record reported by the local genomic context database.
Genomic interval1 676 917-1 677 573 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 676 917-1 678 898 ntGCF_006380995::NZ_PZRG01000004.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006380995::NZ_PZRG01000004.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZRG01000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 676 917-1 678 898 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 676 917 nt1 678 898 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DA425_RS08780GCF_006380995#DA425_RS08780
RROmpRCurrent focus
1 676 917-1 677 573 nt · Forward (+)
DA425_RS08785GCF_006380995#DA425_RS08785
HKClassic
1 677 570-1 678 898 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS18650Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812458
Simplified PFAM architecture for RROC_1812458
PFAM domain coverage: 181 / 218 aa (83.0%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[143-214]
- Domain count: 2
- Matched identifier: RROC_1812458
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 143-214 ; Trans_reg_C 143-214
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS18650
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 100 total members. Page 1 / 2.
GCF_000186525#HMPREF9488_RS18650 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006380995
AssemblyASM638099v1 · Contighaploid
Genome composition4 167 354 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key