1 Response_reg#1
3-107 aa · 105 aa · 44.3% of protein
Raw token
Response_reg:3:0.00000000000004:107:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA425_RS00470
Response regulator LytTR family
Clostridioides difficile · GCF_006380995
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_006380995#DA425_RS00470Stable P2CS identifier used across views.
GenomeGCF_006380995Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 237 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-225 aa · 90 aa · 38.0% of protein
Raw token
LytTR:136:4.1e-17:225:94:98- Raw architecture: Response_reg:3:0.00000000000004:107:108:111#LytTR:136:4.1e-17:225:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_006380995::NZ_PZRG01000003.1::G00059
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73914-74627Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA425_00480RefSeq proteinWP_124962851.1
Context group ID
GCF_006380995::NZ_PZRG01000003.1::G00059Context members
DA425_RS00470
Partner locus tags
DA425_RS00470
Partner old locus tags
DA425_00480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_124962851.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA425_RS00470Primary locus identifier stored in the genes table.
Old locus tagDA425_00480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZRG01000003.1Sequence record reported by the local genomic context database.
Genomic interval73 914-74 627 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 914-74 627 ntGCF_006380995::NZ_PZRG01000003.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006380995::NZ_PZRG01000003.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZRG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span73 914-74 627 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 914 nt74 627 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DA425_RS00470GCF_006380995#DA425_RS00470
RRLytTRCurrent focus
73 914-74 627 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003862935#EGL90_RS14115Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0969029
Simplified PFAM architecture for RROC_0969029
PFAM domain coverage: 199 / 237 aa (84.0%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-110] | LytTR[136-227]
- Domain count: 2
- Matched identifier: RROC_0969029
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; LytTR 136-227 ; LytTR 136-227
Cluster members and taxonomy
Representative gene: GCF_003862935#EGL90_RS14115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006380995
AssemblyASM638099v1 · Contighaploid
Genome composition4 167 354 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key