1 Response_reg#1
4-112 aa · 109 aa · 49.5% of protein
Raw token
Response_reg:4:6.45e-25:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA423_RS03440
Response regulator OmpR family
Clostridioides difficile · GCF_006380955
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006380955#DA423_RS03440Stable P2CS identifier used across views.
GenomeGCF_006380955Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 220 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-217 aa · 72 aa · 32.7% of protein
Raw token
Trans_reg_C:146:7.08e-26:217:76:77- Raw architecture: Response_reg:4:6.45e-25:112:111:111#Trans_reg_C:146:7.08e-26:217:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006380955::NZ_PZRE01000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span498510-500353Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA423_03440RefSeq proteinWP_009901935.1
Context group ID
GCF_006380955::NZ_PZRE01000002.1::G00004Context members
DA423_RS03435DA423_RS03440
Partner locus tags
DA423_RS03435DA423_RS03440
Partner old locus tags
DA423_03435DA423_03440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009901935.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74QCT3Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74QCT3_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA423_RS03440Primary locus identifier stored in the genes table.
Old locus tagDA423_03440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZRE01000002.1Sequence record reported by the local genomic context database.
Genomic interval499 691-500 353 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span498 510-500 353 ntGCF_006380955::NZ_PZRE01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006380955::NZ_PZRE01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZRE01000002.1All displayed genes belong to this local TCS context.
Neighborhood span498 510-500 353 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
498 510 nt500 353 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DA423_RS03435GCF_006380955#DA423_RS03435
HKClassic
498 510-499 691 nt · Reverse (-)
DA423_RS03440GCF_006380955#DA423_RS03440
RROmpRCurrent focus
499 691-500 353 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155025#UAB_RS0203500Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1723006
Simplified PFAM architecture for RROC_1723006
PFAM domain coverage: 180 / 220 aa (81.8%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1723006
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_000155025#UAB_RS0203500
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 162 total members. Page 1 / 4.
GCF_000155025#UAB_RS0203500 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006380955
AssemblyASM638095v1 · Contighaploid
Genome composition4 451 150 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key