1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:5.44e-30:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA417_RS11345
Response regulator OmpR family
Clostridioides difficile · GCF_006380895
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_006380895#DA417_RS11345Stable P2CS identifier used across views.
GenomeGCF_006380895Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:146:8.59e-24:221:78:77- Raw architecture: Response_reg:4:5.44e-30:113:111:111#Trans_reg_C:146:8.59e-24:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_006380895::NZ_PZRA01000009.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span243510-245217Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA417_11350RefSeq proteinWP_009889929.1
Context group ID
GCF_006380895::NZ_PZRA01000009.1::G00002Context members
DA417_RS11340DA417_RS11345
Partner locus tags
DA417_RS11340DA417_RS11345
Partner old locus tags
DA417_11345DA417_11350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009889929.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N7U9Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N7U9_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA417_RS11345Primary locus identifier stored in the genes table.
Old locus tagDA417_11350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZRA01000009.1Sequence record reported by the local genomic context database.
Genomic interval244 531-245 217 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span243 510-245 217 ntGCF_006380895::NZ_PZRA01000009.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006380895::NZ_PZRA01000009.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZRA01000009.1All displayed genes belong to this local TCS context.
Neighborhood span243 510-245 217 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
243 510 nt245 217 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DA417_RS11340GCF_006380895#DA417_RS11340
HKClassic
243 510-244 541 nt · Reverse (-)
DA417_RS11345GCF_006380895#DA417_RS11345
RROmpRCurrent focus
244 531-245 217 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0209900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301497
Simplified PFAM architecture for RROC_1301497
PFAM domain coverage: 184 / 228 aa (80.7%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1301497
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0209900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006380895
AssemblyASM638089v1 · Contighaploid
Genome composition4 192 092 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key