1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.37e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DA417_RS04680
Response regulator OmpR family
Clostridioides difficile · GCF_006380895
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_006380895#DA417_RS04680Stable P2CS identifier used across views.
GenomeGCF_006380895Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:4.07e-28:232:78:77- Raw architecture: Response_reg:5:1.37e-36:114:111:111#Trans_reg_C:155:4.07e-28:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_006380895::NZ_PZRA01000008.1::G00041
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span141746-147471Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDA417_04675RefSeq proteinWP_009891729.1
Context group ID
GCF_006380895::NZ_PZRA01000008.1::G00041Context members
DA417_RS04665DA417_RS04670DA417_RS04675DA417_RS04680DA417_RS04685
Partner locus tags
DA417_RS04665DA417_RS04670DA417_RS04675DA417_RS04680DA417_RS04685
Partner old locus tags
DA417_04660DA417_04665DA417_04670DA417_04675DA417_04680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891729.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N7P0Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N7P0_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDA417_RS04680Primary locus identifier stored in the genes table.
Old locus tagDA417_04675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PZRA01000008.1Sequence record reported by the local genomic context database.
Genomic interval145 622-146 320 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span141 746-147 471 ntGCF_006380895::NZ_PZRA01000008.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_006380895::NZ_PZRA01000008.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PZRA01000008.1All displayed genes belong to this local TCS context.
Neighborhood span141 746-147 471 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
141 746 nt147 471 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
DA417_RS04665GCF_006380895#DA417_RS04665
RROmpR
141 746-142 423 nt · Forward (+)
DA417_RS04670GCF_006380895#DA417_RS04670
HKClassic
142 495-144 510 nt · Forward (+)
DA417_RS04675GCF_006380895#DA417_RS04675
RROmpR
144 560-145 240 nt · Forward (+)
DA417_RS04680GCF_006380895#DA417_RS04680
RROmpRCurrent focus
145 622-146 320 nt · Forward (+)
DA417_RS04685GCF_006380895#DA417_RS04685
HKClassic
146 356-147 471 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119294
Simplified PFAM architecture for RROC_1119294
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1119294
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_006380895
AssemblyASM638089v1 · Contighaploid
Genome composition4 192 092 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key