1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:3.31e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FGQ75_RS10685
Response regulator OmpR family
Agathobacter rectalis · GCF_005844305
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_005844305#FGQ75_RS10685Stable P2CS identifier used across views.
GenomeGCF_005844305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 223 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:147:4.53e-26:222:77:77- Raw architecture: Response_reg:4:3.31e-25:113:111:111#Trans_reg_C:147:4.53e-26:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_005844305::NZ_SPFX01000017.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27872-28543Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_005844305::NZ_SPFX01000017.1::G00010Context members
FGQ75_RS10685
Partner locus tags
FGQ75_RS10685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012743841.1Primary protein accession used for annex mappings.
UniProt accessionC4Z8I7Primary UniProt accession resolved in the annex database.
UniProt IDC4Z8I7_AGARVDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFGQ75_RS10685Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SPFX01000017.1Sequence record reported by the local genomic context database.
Genomic interval27 872-28 543 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 872-28 543 ntGCF_005844305::NZ_SPFX01000017.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005844305::NZ_SPFX01000017.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SPFX01000017.1All displayed genes belong to this local TCS context.
Neighborhood span27 872-28 543 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 872 nt28 543 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FGQ75_RS10685GCF_005844305#FGQ75_RS10685
RROmpRCurrent focus
27 872-28 543 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS13865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587078
Simplified PFAM architecture for RROC_1587078
PFAM domain coverage: 184 / 223 aa (82.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1587078
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS13865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_005844305
AssemblyASM584430v1 · Scaffoldhaploid
Genome composition3 334 864 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 74 · HK 33 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key