1 Response_reg#1
3-117 aa · 115 aa · 57.8% of protein
Raw token
Response_reg:3:9.44e-20:117:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FGQ75_RS09920
Response regulator NarL family
Agathobacter rectalis · GCF_005844305
ClassRRTypeNarLLength199 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_005844305#FGQ75_RS09920Stable P2CS identifier used across views.
GenomeGCF_005844305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length199 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 199 aa (86.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa199 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
132-189 aa · 58 aa · 29.1% of protein
Raw token
HTH_LUXR:132:1.36e-18:189:58:58- Raw architecture: Response_reg:3:9.44e-20:117:115:111#HTH_LUXR:132:1.36e-18:189:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_005844305::NZ_SPFX01000015.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span48241-48840Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_005844305::NZ_SPFX01000015.1::G00007Context members
FGQ75_RS09920
Partner locus tags
FGQ75_RS09920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009243057.1Primary protein accession used for annex mappings.
UniProt accessionA0A412B9L8Primary UniProt accession resolved in the annex database.
UniProt IDA0A412B9L8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFGQ75_RS09920Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SPFX01000015.1Sequence record reported by the local genomic context database.
Genomic interval48 241-48 840 nt600 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span48 241-48 840 ntGCF_005844305::NZ_SPFX01000015.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005844305::NZ_SPFX01000015.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SPFX01000015.1All displayed genes belong to this local TCS context.
Neighborhood span48 241-48 840 nt600 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 241 nt48 840 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FGQ75_RS09920GCF_005844305#FGQ75_RS09920
RRNarLCurrent focus
48 241-48 840 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS17495Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2143812
Simplified PFAM architecture for RROC_2143812
PFAM domain coverage: 171 / 199 aa (85.9%)
1 aa199 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-117] | GerE[133-188]
- Domain count: 2
- Matched identifier: RROC_2143812
- Positioned domains: Response_reg 3-117 ; Response_reg 3-117 ; GerE 133-188 ; GerE 133-188
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS17495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_005844305
AssemblyASM584430v1 · Scaffoldhaploid
Genome composition3 334 864 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 74 · HK 33 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key