1 Response_reg#1
3-119 aa · 117 aa · 35.0% of protein
Raw token
Response_reg:3:3.4e-28:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FGQ75_RS06470
Response regulator, unclassified
Agathobacter rectalis · GCF_005844305
ClassRRTypeunclassifiedLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_005844305#FGQ75_RS06470Stable P2CS identifier used across views.
GenomeGCF_005844305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 334 aa (56.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
241-277 aa · 37 aa · 11.1% of protein
Raw token
HTH_AraC:241:0.000000000465:277:37:423 HTH_AraC#3
294-329 aa · 36 aa · 10.8% of protein
Raw token
HTH_AraC:294:0.000004:329:36:42- Raw architecture: Response_reg:3:3.4e-28:119:117:111#HTH_AraC:241:0.000000000465:277:37:42#HTH_AraC:294:0.000004:329:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_005844305::NZ_SPFX01000008.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span118161-120930Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_005844305::NZ_SPFX01000008.1::G00040Context members
FGQ75_RS06470FGQ75_RS06475
Partner locus tags
FGQ75_RS06470FGQ75_RS06475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_138304542.1Primary protein accession used for annex mappings.
UniProt accessionA0A413BH22Primary UniProt accession resolved in the annex database.
UniProt IDA0A413BH22_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 2Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFGQ75_RS06470Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SPFX01000008.1Sequence record reported by the local genomic context database.
Genomic interval118 161-119 165 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span118 161-120 930 ntGCF_005844305::NZ_SPFX01000008.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005844305::NZ_SPFX01000008.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SPFX01000008.1All displayed genes belong to this local TCS context.
Neighborhood span118 161-120 930 nt2 770 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
118 161 nt120 930 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FGQ75_RS06470GCF_005844305#FGQ75_RS06470
RRunclassifiedCurrent focus
118 161-119 165 nt · Reverse (-)
FGQ75_RS06475GCF_005844305#FGQ75_RS06475
HKClassic
119 143-120 930 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005844305#FGQ75_RS06470The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0513801
Simplified PFAM architecture for RROC_0513801
PFAM domain coverage: 181 / 334 aa (54.2%)
1 aa334 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-105] | HTH_18[252-329]
- Domain count: 2
- Matched identifier: RROC_0513801
- Positioned domains: Response_reg 3-105 ; Response_reg 3-105 ; HTH_18 252-329 ; HTH_18 252-329
Cluster members and taxonomy
Representative gene: GCF_005844305#FGQ75_RS06470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_005844305
AssemblyASM584430v1 · Scaffoldhaploid
Genome composition3 334 864 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 74 · HK 33 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key