1 Response_reg#1
6-116 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:6:4.74e-35:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FGQ75_RS04840
Response regulator OmpR family
Agathobacter rectalis · GCF_005844305
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_005844305#FGQ75_RS04840Stable P2CS identifier used across views.
GenomeGCF_005844305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.1e-32:223:77:77- Raw architecture: Response_reg:6:4.74e-35:116:112:111#Trans_reg_C:150:2.1e-32:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_005844305::NZ_SPFX01000006.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88306-90506Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_005844305::NZ_SPFX01000006.1::G00030Context members
FGQ75_RS04835FGQ75_RS04840
Partner locus tags
FGQ75_RS04835FGQ75_RS04840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118003971.1Primary protein accession used for annex mappings.
UniProt accessionA0A414M6S4Primary UniProt accession resolved in the annex database.
UniProt IDA0A414M6S4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFGQ75_RS04840Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_SPFX01000006.1Sequence record reported by the local genomic context database.
Genomic interval89 826-90 506 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 306-90 506 ntGCF_005844305::NZ_SPFX01000006.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005844305::NZ_SPFX01000006.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SPFX01000006.1All displayed genes belong to this local TCS context.
Neighborhood span88 306-90 506 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 306 nt90 506 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FGQ75_RS04835GCF_005844305#FGQ75_RS04835
HKClassic
88 306-89 781 nt · Reverse (-)
FGQ75_RS04840GCF_005844305#FGQ75_RS04840
RROmpRCurrent focus
89 826-90 506 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460255#DWX07_RS05965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1421352
Simplified PFAM architecture for RROC_1421352
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1421352
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_003460255#DWX07_RS05965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_005844305
AssemblyASM584430v1 · Scaffoldhaploid
Genome composition3 334 864 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 74 · HK 33 · RR 39CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key